Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
2PVE Chain:B ((2-52))
----KKYTCKICGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPICGAPKSEFEEV-----
General information:
TITO was launched using:
RESULT:
Template:
2PVE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11121 for 307 contacts (-36.2/contact) +
2D Compatibility (PS) -5409 + (NN) -4861 + (LL) 656
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -25235.0 ( -82.20 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2PVE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PVE-query.scw
PDB file :
Tito_Scwrl_2PVE.pdb
: