Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTARLRPELAGLPVYVPGKTVPGAIKLASNETVFGPLPSVRAAIDRATD----TVNRYPDNGCVQLKAALARHLGPDFAPEHVAVGCGSVSLCQQLVQVTASVGDEVVFGWRSFELYPPQVRVAGAIPIQVPLTDHTFDLYAMLATVTDRTRLIFVCNPNNPTSTVVGPDALARFVEAVPAHILIAIDEAYVEYIRDGMRPDSLGLVRAHNNVVVLRTFSKAYGLAGLRIGYAIGHPDVITALDKVYVPFTVSSIGQAAAIASLDAADELLARTDTVV-AERARVSAELRAAGFTLPPSQANFVWLPLGS-RTQDFVEQAADARIVVRPYG----TDGVRVTVAAPEENDAFLRFARRWRSDQ |
| 3HDO Chain:A ((22-352)) | -----------------PPDIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELY--GFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD-FRIAGFPER--YEGKVFFLTTPNAPLGPSFPLEYIDELARRC--AGMLVLDETYAEFAESNAL----ELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYNLDRLAQAACVAALRDQ-AYLSECCRRIRETREWFTTELRSIGYDVIPSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIGTREEMEQTLAALKEIG--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239367 for 2716 contacts (-88.1/contact) +
2D Compatibility (PS) -35481 + (NN) -18253 + (LL) 1124
1D Compatibility (HY) -20800 + (ID) 4350
Total energy: -317127.0 ( -116.76 by residue)
QMean score : 0.605
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