Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTAIYLAGPDVFRPDA------EAHGETLKALCAEFGFVGLYPLDHALPADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA-
4JEM Chain:A ((14-170))
AVGSVFLGGPFRQLVDPRTGVMSSGDQNVFSRLIEHFESRGTTVYNAHRREAWGAEFLSPAEATRLDHDEIKAADVFVAFP----GVPASPGTHVEIGWASGMGKPMVLLLERDEDYAFLVTGLESQ-------------------ANVEILRFSGTEEIVERLDGAVARVLGRAGEPTV
General information:
TITO was launched using:
RESULT:
Template:
4JEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87619 for 1124 contacts (-78.0/contact) +
2D Compatibility (PS) -15930 + (NN) -9176 + (LL) 416
1D Compatibility (HY) -4800 + (ID) 1450
Total energy: -118559.0 ( -105.48 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_4JEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JEM-query.scw
PDB file :
Tito_Scwrl_4JEM.pdb
: