Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQS-KDALMLEAFEQLLGKRRELLGELDPG-LSGKERRALAAAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAE-----S---PEETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN
1SGM Chain:A ((5-183))
-----GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDNT-ESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEEEANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQI-----
General information:
TITO was launched using:
RESULT:
Template:
1SGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64614 for 1258 contacts (-51.4/contact) +
2D Compatibility (PS) -18912 + (NN) -14504 + (LL) 816
1D Compatibility (HY) -1600 + (ID) 1450
Total energy: -100264.0 ( -79.70 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_1SGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SGM-query.scw
PDB file :
Tito_Scwrl_1SGM.pdb
: