Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVFLAIGALLPICLAGGALLGYAAVRFRVQGDPVAEQVNALLPQTQCGQCGYPGCKPYAEAIAAGDKINKCPPGGEATIRALADLLDLEPEPLDAAEETPPRVAYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCI-EMREIPDDVRHWKWPQPSPRLIASDRERAA
1G3O Chain:A ((1-67))
---------------------------------------------------------------------------------------------------------AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAIFSEDEVPEDMQEF------------------
General information:
TITO was launched using:
RESULT:
Template:
1G3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63722 for 396 contacts (-160.9/contact) +
2D Compatibility (PS) -6646 + (NN) -3937 + (LL) 6836
1D Compatibility (HY) -7200 + (ID) 1100
Total energy: -75769.0 ( -191.34 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1G3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G3O-query.scw
PDB file :
Tito_Scwrl_1G3O.pdb
: