Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSTIHPLPSFGLGTFRLTGQVVVDSVRSALELGYRAIDTAQIYGNEADIGRAIA----ESGVPRSELFLTTKVWVDNYAREKLLASLRESLEKLRTDRLDLVLIHWPAPGNGVELGEYMAA---LAEAKSLGLTRRIGVSNF------NIELTRQAIAAVGAGEISTNQIELSPYLQNRALTAYLEEQGIAVTSYMTLAYGK--VLKDPTLAGIAARHRATVAQVALAWAMQLGYAVIPSSTRRENLASNLLARDLRLDAEDMARIAGLERNGREVSPQGLAPAWD |
1VP5 Chain:A ((26-275)) | -------MPILGYGVFQIPPEKTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIKRAIDEGIVRREELFVTTKLWVSDVGYESTKKAFEKSLKKLQLEYIDLYLIHQP-------FGDVHCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVHHEIVPAV-------NQIEIHPFYQRQEEIEFMRNYNIQPEAWGPFAEGRKNIFQNGVLRSIAEKYGKTVAQVILRWLTQKGIVAIPKTVRRERMKENISIFDFELTQEDMEKIATLD---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VP5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -141376 for 1955 contacts (-72.3/contact) +
2D Compatibility (PS) -25633 + (NN) -11380 + (LL) 748
1D Compatibility (HY) -19600 + (ID) 4550
Total energy: -201791.0 ( -103.22 by residue)
QMean score : 0.491
|
|
|