Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLLPLAV----LAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQT------STGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEA---GIGVAAFSGT-RVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI---
1AOC Chain:A ((1-175))
ADTNAPICLCDEPGVLGRTQIVTTEIKDKIEKAVEAVAQESGVSGRGFSIFSHHPVFRECGKYECRTVRPEHSRCYNFPPFTHFKSECPVSTRDCEPVFGYTVAGE-FRVIVQAPRAGFRQCVWQHKCRFGSNSCGYNGRC-----------TQQRSVVRLVTYN---LEKDGFLCESFRTCCGCPCRSF
General information:
TITO was launched using:
RESULT:
Template:
1AOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45541 for 1046 contacts (-43.5/contact) +
2D Compatibility (PS) -16270 + (NN) -1195 + (LL) 512
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -69544.0 ( -66.49 by residue)
QMean score : 0.059
(partial model without unconserved sides chains):
PDB file :
Tito_1AOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AOC-query.scw
PDB file :
Tito_Scwrl_1AOC.pdb
: