Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDLRWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
1RTZ Chain:A ((4-151))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQG-----RGGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
1RTZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115118 for 1096 contacts (-105.0/contact) +
2D Compatibility (PS) -15786 + (NN) -7272 + (LL) 1324
1D Compatibility (HY) -16000 + (ID) 3750
Total energy: -156602.0 ( -142.89 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1RTZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTZ-query.scw
PDB file :
Tito_Scwrl_1RTZ.pdb
: