Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQV---PLDASG-VADLRSADNCHTLMSKILARTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAIP---YLKENQGSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYG----MGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR
4DC1 Chain:B ((28-278))
----VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHFSDIWEVSTEEAFDR-ITARVPIG---RYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL----
General information:
TITO was launched using:
RESULT:
Template:
4DC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146761 for 2056 contacts (-71.4/contact) +
2D Compatibility (PS) -26173 + (NN) -15760 + (LL) 632
1D Compatibility (HY) -17600 + (ID) 4250
Total energy: -209912.0 ( -102.10 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4DC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DC1-query.scw
PDB file :
Tito_Scwrl_4DC1.pdb
: