Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFLDLFD-ESLFVKVGMELFYQEGPQLINEIKE-RGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTKI--IAVTQLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
3RU6 Chain:A ((24-251))
-AMKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFIEELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSK--FSKRPLVLAVSALTSFDEENFF-S-IYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNFLTLTPGIRPFG--------VANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIH-
General information:
TITO was launched using:
RESULT:
Template:
3RU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114312 for 1743 contacts (-65.6/contact) +
2D Compatibility (PS) -23987 + (NN) -11384 + (LL) 876
1D Compatibility (HY) -19600 + (ID) 4150
Total energy: -172557.0 ( -99.00 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_3RU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RU6-query.scw
PDB file :
Tito_Scwrl_3RU6.pdb
: