Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVGEVLKDMQIDAVYTSTSKRTQDTAAYILGDREIEIQPLEELKEMGFGTWEGIRVTEIDEKHPEERAKILHSPETYK--AEVNGGETYYELAERLLEGVEKIIADNPNGNILVVSHGMSLTLLLYL-LQGGTIEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK
1H2E Chain:A ((1-203))
----ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAF----DHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWS--PPYMYGTSVTIIEVDGGTFHVAVEGDVSHIEE-
General information:
TITO was launched using:
RESULT:
Template:
1H2E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59374 for 1632 contacts (-36.4/contact) +
2D Compatibility (PS) -21622 + (NN) -5710 + (LL) 1072
1D Compatibility (HY) -11600 + (ID) 3200
Total energy: -100434.0 ( -61.54 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1H2E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H2E-query.scw
PDB file :
Tito_Scwrl_1H2E.pdb
: