Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHIRVAAIIRHQNKILLHTTKNENYWTLPGGAVE-NELTKEGLQREMREELGEEVTIRELKIIAENRFVYRGEEMDSIEFYYIVELYPNSALLELSTFTKIEQFGQNGETDYELNFKWFEIDKVSEIEILPKFLQTELTQLSSDRIKHIQ
3GWY Chain:A ((5-129))
---EVVAAVIRLGEKYLCVQR---FRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYP----DFEITMHAFLCHPVG---Q----RYV----------LKEHIAAQWLSTREMAILDWA-EADKPIVRKISE-------
General information:
TITO was launched using:
RESULT:
Template:
3GWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74150 for 827 contacts (-89.7/contact) +
2D Compatibility (PS) -11622 + (NN) 4224 + (LL) 1936
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -85962.0 ( -103.94 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3GWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GWY-query.scw
PDB file :
Tito_Scwrl_3GWY.pdb
: