Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKFFLESERLIIRPLEESDYDSWYTSFMNRGPSLTPFDDGILDMSMCDINWFKNLVNLQRKEWESDIVYIFGVFLKSGEHVGMLNIVTLARADMQWGELGYVFHNQFWSNGYAFESILALLNSTYEKLGFHHIEAQITPGNERSENLVRRLGLTYETTRKDFSFENGKWTDKLIYSINLHNNNLE
4MHD Chain:A ((26-195))
-------NSQLTLRALERGDLR-FIHNLNNNRNIMSYWFEEPYES-------FDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHR-SAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNR
General information:
TITO was launched using:
RESULT:
Template:
4MHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80309 for 1198 contacts (-67.0/contact) +
2D Compatibility (PS) -18166 + (NN) -3889 + (LL) 1268
1D Compatibility (HY) -7200 + (ID) 1500
Total energy: -109796.0 ( -91.65 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4MHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MHD-query.scw
PDB file :
Tito_Scwrl_4MHD.pdb
: