Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLDILYCKLAMCTTLLTERLRLQPVDLSNINDFLEFSSDSETVFYMQRYKA-NTTEEAQMVLANVCMKSPLGIYAMIETESNKMIGIIELEIRD--EFSAEFGYILNKNYSGKGYMTEACSKLMSVGFEYLDLERIYARFDINNKKSGNVMERLGMKKEGELRHLAKNPKGEWKTRAYYSILKEEYFNKVNTK
3TTH Chain:A ((5-168))
-------------------KKIRLSALEREDLKFVHELNNN--IMSY-WFEEPYESYRELEDLHIKHIHDQSERRFIIKD-LKDNKVGLVELTEIDFIHRRCEFAIIISPGEEGKGYATEATDLTVEYAFSILNLHKIYLLVDEDNPAALHIYRKSGFAEEGKLVDE-YYSKGRYRTAIRMYVLKK---------
General information:
TITO was launched using:
RESULT:
Template:
3TTH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53846 for 1095 contacts (-49.2/contact) +
2D Compatibility (PS) -16648 + (NN) -3470 + (LL) 2904
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -79210.0 ( -72.34 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_3TTH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TTH-query.scw
PDB file :
Tito_Scwrl_3TTH.pdb
: