Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLVATDMDGTFLDENGTYDKKRLANVLKKFKEQGIVFTAASGRSLLSLEQLFADFRDQMAFIAENGSAAVLFN-RLAYEQHLSREQYLDIIDHLSKSPYMENNEYVLSGKDGAYILSDANP--------DYIE-FITHYYDNLQKVSHFEDVD--DI--IFKVTANFTEETVRQAEEWVNQAIPYTTAVTTGFKSIDIILSSVNKRNGLEHLCEQYGIRAEEVLSFGDNINDLEMLEWSGKAIATENARPEVKEIADCIIGHHNNQAVMAYLESMVD |
| 3DNP Chain:A ((6-274)) | -KQLLALNIDGALLRSNGKIHQAT-KDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESY----QCNIRLLH--EKYSIGNKKKVNSNLLGKALIHPSDPIFYPV-QFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTRSNDEQGVAYMMKEYFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113867 for 2220 contacts (-51.3/contact) +
2D Compatibility (PS) -28079 + (NN) -12683 + (LL) 812
1D Compatibility (HY) -13600 + (ID) 2600
Total energy: -170017.0 ( -76.58 by residue)
QMean score : 0.495
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