Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKERELRRTMAVFPIGTVMKLTDLTARQIRYYEDQGLITPERTEGNRRMFSLNDMDRLLEIKDFISDGLHISDIKNEY--------MQRQHKSKEKQKSLSDAEVRRLLQDELRNQGRFSSPSQHIGNMHL
2ZHG Chain:A ((10-135))
----------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP
General information:
TITO was launched using:
RESULT:
Template:
2ZHG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14762 for 704 contacts (-21.0/contact) +
2D Compatibility (PS) -12511 + (NN) -6202 + (LL) 1216
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -36059.0 ( -51.22 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2ZHG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZHG-query.scw
PDB file :
Tito_Scwrl_2ZHG.pdb
: