Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQLNSSFMIGKVEIPHRTVLAP-MAGITNSAFRTIAKEFGAGLVVME-MISEKGLLYN-NEKTLHMLHIDENEHPMSIQLFGGDAEGLKRAADFIQSNTKADIVDINMGCPVNKVVKNEAGAKWLRDPEKIYHIVKEVTSVLDIPLTVKMRTGWSDSSNAIENALAAESAGVSALAMHGRTREQMYTGTCDHETLGKVAKAVTSIPFIANGDIRTVHDAKFMIEEIGADAIMVGRGARSNPYIFTQINHFFETGEILPDLPFEKMLDVAEDHLTRLVNLKGETIAVREF-RGLAPHYLRGKSGAAKIRGAV-S--RAETLAE-VQELFAGLR |
| 1VHN Chain:A ((5-309)) | ----------------VKVGLAPMA-GYTDSAFRTLAFEWGADFAFSEMVSAKGFL---MNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSEK--YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGW-EKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGK-YSEPSREEILRTFERHLELLIKTKGERKAVVE-MRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165224 for 2522 contacts (-65.5/contact) +
2D Compatibility (PS) -32553 + (NN) -16306 + (LL) 2360
1D Compatibility (HY) -16400 + (ID) 5100
Total energy: -233223.0 ( -92.48 by residue)
QMean score : 0.564
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