Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRTVLVLNGPNLNLLGTREPQTYGRRTLGEIADECAAFAETRGFAVDFRQTNQEGQLLDWIHQARGRVAGIVINPAAWTHTSVALRDALAAVE-LPVVEVHLSNVHQREAFRHHSYVSPVALGVICGFGSLGYRLALEHFAERFEAAA
1V1J Chain:K ((10-147))
----IMILNGPNLNLLGQRQPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQREPFRHHSYVSQRADGVVAGCGVQGYVFGVERIAALAG---
General information:
TITO was launched using:
RESULT:
Template:
1V1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124900 for 1114 contacts (-112.1/contact) +
2D Compatibility (PS) -15099 + (NN) -3742 + (LL) 748
1D Compatibility (HY) -13600 + (ID) 4000
Total energy: -160593.0 ( -144.16 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1V1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V1J-query.scw
PDB file :
Tito_Scwrl_1V1J.pdb
: