Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRALLLSTLVAGALSCGLPANLPQLPRVVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSS---RTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIANN
2OQ5 Chain:A ((1-231))
----------------------------IVGGTEVEEGEWPWQASLQWDG----SHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIK----PSKMKRGLRRIIVHEKYKHPS--HDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD--ECAKPNKPGVYTRVTALRDWITSKTG--
General information:
TITO was launched using:
RESULT:
Template:
2OQ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172118 for 1926 contacts (-89.4/contact) +
2D Compatibility (PS) -25083 + (NN) -13277 + (LL) 2376
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -228252.0 ( -118.51 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_2OQ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OQ5-query.scw
PDB file :
Tito_Scwrl_2OQ5.pdb
: