Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSTRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSN-LECAWD----------------------------------PATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPAARTKFAQSCVRIMKDYG----------------FDGVDIDWEYPQA------------AEVDGFIAALQEIRTLLNQQTIADGRQALPYQLTIAGAGGAFFLSRYYSKLAQI--VAPLDYINLMTYDLAGPWEKI-TNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPNADYWLVGCDECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGYITSAPGSDSAWLKVGRLA |
1KFW Chain:A ((7-423)) | --NGYRNVGYFAQWGVYGRAFQA---KQLDV------SGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSK-------NFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKK---YVLSAFLPANPADIDAG--GWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRA---------------------PSKKFSADKAVKK-YLAAGIDPKQLGLGLAAYGRGWTGAKNVSP--WGPATDGAPGTY-----------------ETANEDYDKLKTL------GTDHYDAATGSAWRYD--GTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGD-RNGELVGAMSDKFRA--------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KFW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178666 for 3073 contacts (-58.1/contact) +
2D Compatibility (PS) -38173 + (NN) -25808 + (LL) 6428
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -259469.0 ( -84.44 by residue)
QMean score : 0.451
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