Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGS----EIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGL--APTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIK-AL-DLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQS-HLSFEEFLAVAARQSTLMVENLVQNLARG
4L0M Chain:A ((23-259))
-MILIISAMQEESEEINKILDNKEEIVLNDYLENKKIYKGKILGKDVISLTTGIGKVNAATWSSQIISKYKITHIINSGSSGGIKENSNLKILDIIVSSETAYYDFDLTKFGHKIGQVPNLPQKFKADEELLKKVANIVDNKLLNIDIHIGLILTGDQFVDNEKNLETIKKNFKDALAVDMEGAAIAQVAHIFKIPFIIIRSISDLPNNKDNHIDFNKFLKTSSINSSKMTKELIRLI---
General information:
TITO was launched using:
RESULT:
Template:
4L0M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163283 for 1961 contacts (-83.3/contact) +
2D Compatibility (PS) -25213 + (NN) -18229 + (LL) 280
1D Compatibility (HY) -22000 + (ID) 4450
Total energy: -232895.0 ( -118.76 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4L0M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L0M-query.scw
PDB file :
Tito_Scwrl_4L0M.pdb
: