Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQVTR-NLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSENYSKTIAKLAPQSIQKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIA-----YSEPLYVVRINTKNNEIVVG---PVNALMQRKILVKELNWL--EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS------ |
| 2DER Chain:A ((17-380)) | -----------------AKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD-----GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLV---------------KFREFLGRYLPA--QPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKA-LDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187506 for 2682 contacts (-69.9/contact) +
2D Compatibility (PS) -35595 + (NN) -7726 + (LL) 2544
1D Compatibility (HY) -24000 + (ID) 6350
Total energy: -258633.0 ( -96.43 by residue)
QMean score : 0.454
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