Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRGDFAFKIIKQSNSARAGTIKTPSGNIETPAFIFCATRAAIKAADIERISEAGTQIILSNTYHLMLQPGENTVAKLGGLRKMMGWNGPMLTDSGGYQIFSLGHGSVSEEIKGIRKKQKTLIKIDEDGAIFRSYINGKAYCLTPERSIQIQQKLGADLILVLDECTPFHVSKEYTRRSMLMSHKWAERSLNEFG--KDDNGKQALYGISQGGVYRDLRRESCYFINNLPFFGQAIGG-SLGRSKEQMYDVVSFTMEHLKKDRPTHLLGIGRIVDIFYAVEAGIDTFDCVHPTRLARHGGALIKVKNRNTISSRYKEHINLRNQQFELDGNPIEGDCLCFTCRKYSRAYIHHLLKTKELLAYTLITIHNVFFMNKLMKSIRQAILDDRLDQEKSNWVGEV |
| 1S39 Chain:A ((11-372)) | -RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSL-------------------TKQSEEGVTFKSH---SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFT-----------WDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARY |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202291 for 3164 contacts (-63.9/contact) +
2D Compatibility (PS) -37825 + (NN) -12261 + (LL) 1704
1D Compatibility (HY) -27200 + (ID) 7950
Total energy: -285823.0 ( -90.34 by residue)
QMean score : 0.542
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