Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGI-KNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVT-GGST-M-ACVS-EAIHLLPYNVFFVPARGGLGENVVFQANTIAASM-AQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALK-MAHRR-QSPEKVIE-Q-LQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAY-LTIAPKNTVLITDEAAAKIILE |
2O0M Chain:A ((95-341)) | -----------------------------------------------------------------------------------------------HQIEKEMTQYFGIQRCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISA-VMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRALHMAARRKMSD----DEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKN-APKQTWLITDEAAANEILK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O0M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120140 for 1927 contacts (-62.3/contact) +
2D Compatibility (PS) -25436 + (NN) -10097 + (LL) 7600
1D Compatibility (HY) -15200 + (ID) 5000
Total energy: -168273.0 ( -87.32 by residue)
QMean score : 0.496
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