Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDP-------ELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVN--IADKIIIGGGMAYTFLKAQGKEIG---ISLLEE----DKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQ------EGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK |
2CUN Chain:A ((4-399)) | -----LEDFNFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYSED---YTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRF----SAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVD------FAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIAD-SPAFSVLGGGHSIASIQKYGI-TGITHISTGGGAMLSFFAGEELPVLRALQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CUN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199933 for 3385 contacts (-59.1/contact) +
2D Compatibility (PS) -40498 + (NN) -18026 + (LL) 1828
1D Compatibility (HY) -26400 + (ID) 7450
Total energy: -290479.0 ( -85.81 by residue)
QMean score : 0.541
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