Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGH------------GKVEDYTLDELKQLDAGSWFNKKYP-------KYARASYKNAKVPTLDEILERYGP-------NANYYIETKSPDVY----PGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHR-QNKHVP----LVKLVDKGELQ----------Q--------FNDQRLKEIRSYAIGLGPDYTDL-----------TEQNTHHLKDLGFIVHPYTVNEKA------DMLRLN-----KYGVDGVFTNFADKYKEVIK |
| 1YDY Chain:A ((29-356)) | ---------------------------------------------------NEKIVIAHRGASGYLPEHTLPAKAMA-YAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGK----DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YDY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49773 for 2069 contacts (-24.1/contact) +
2D Compatibility (PS) -27436 + (NN) -9957 + (LL) 3748
1D Compatibility (HY) -15200 + (ID) 4250
Total energy: -102868.0 ( -49.72 by residue)
QMean score : 0.491
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