Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MIRLGKMSDLDQILNLVEEAKELMKEHDNEQWDDQYPLLEHFEEDIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEY--KGAATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPFYAYYKNLKE
1WWZ Chain:A ((1-157))
MDEIKIEKLKKLDKKALNELIDVYMSGYEGLEEYGGEGRDYARNYIKWCWKK-ASDGFFVAKVGDKIVGFIVCDKDWFS-------KYEGRIVGAIHEFVVDKKFQGKGIGRKLLITCLDFLG-KYNDTIELWVGEKNYGAMNLYEKFGFKKVGKSGIWVRMIKRQ------------
General information:
TITO was launched using:
RESULT:
Template:
1WWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63488 for 1113 contacts (-57.0/contact) +
2D Compatibility (PS) -15650 + (NN) -1601 + (LL) 1572
1D Compatibility (HY) -8800 + (ID) 1750
Total energy: -89717.0 ( -80.61 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1WWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WWZ-query.scw
PDB file :
Tito_Scwrl_1WWZ.pdb
: