Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNLPMNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGVKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVK-----IKVL---QRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLT----FAVMSAADIANVDDATKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH |
| 4GP1 Chain:A ((33-249)) | -----------------------------FREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYF--VQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSD----DRGLAEAAWNFGMAAGVAFQIIDDVLDIYG-------EIGKDIKEHK--------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -13147 for 1410 contacts (-9.3/contact) +
2D Compatibility (PS) -21848 + (NN) -14192 + (LL) 6496
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -58441.0 ( -41.45 by residue)
QMean score : 0.249
|
|
|