Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAK-LLVCDIREQFFNDVLF-----KPKYGYGKYFNPCIDCHANMFRNAFYKMLELDADFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQFLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVSGRGRARQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYREMVFEDGVIVKNGRYFVLPHNARLVVARNEEENHKLDIEHPLMDKIELLGCKGPLSLVDKNASQEDKELAGRIALGYAKTLKNQAYLIQIGNEKRELYPLDKENAREYLFA |
| 2NZ2 Chain:A ((5-127)) | --KGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQK---EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYE-DRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKG--NDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NZ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68079 for 811 contacts (-83.9/contact) +
2D Compatibility (PS) -13014 + (NN) -6725 + (LL) 136
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -92182.0 ( -113.66 by residue)
QMean score : 0.511
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