Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLNDHINVFGLIAALVILVLTI-YESSSLIKEMRDSKSQGELMENGHLIDGIGEFANNVPVGWIASFMCVIVWAFWYFFFGYPL------S-----SFSQIGQYNEEVKAHNQKFEAKWKH---------LGQKELVDMGQGIFLVHCSQCHGITADGLHGSAQNLLRW----DK-EEGIMDTIKHGSKGMDYPAGEMPAIE--MDEKDAKAIASYVMAELSSVKK-TKNPQLIDKGKELFESMGCAGCHGNDGKGLQENQVFAADLTTY-----G-TESFLRNILTHGKKGNIGRMPSFKYKNFSDLQVKALVEFIKSLKPLED |
| 3MK7 Chain:C ((1-303)) | -------MSTFWSGYIALLTLGTIVALFWLIFATRKGESAGTTDQTMGHAFDGIEEYDNPLPRWWFLLFIGTLVFGILYLVLYPGLGNWKGVLPGYEGGWTQEKQWEREVAQADEKYGPIFAKYAAMSVEEVAQDPQAVKMGARLFANYCSICHGSDAKGSL-GFPNLADQDWRWGGDAASIKTSILNGRI------AAMPAWGQAIGEEGVKNVAAFVRKDLAGLPLPEGTDADLSAGKNVYAQ-TCAVCHGQGGEGMA--ALGAPKLNSAAGWIYGSSLGQLQQTIRHG---RNGQMPAQQ-QYLGDDKVHLLAAYVYSLSQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MK7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89949 for 1667 contacts (-54.0/contact) +
2D Compatibility (PS) -28200 + (NN) -13682 + (LL) 696
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -146535.0 ( -87.90 by residue)
QMean score : 0.340
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