Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDANCLKLMFVAGSQDFYHIKGDRTNALLDTLELALQSKITAFQFRQKGDLALQDPVEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHVGQEDMAIEEVVTLCQKRLFIGLSVNTLEQALKARHLDHIAYLGVGPIFPTPSKKDAKEVVGVNLLKKIHDSGVEKPLIAIGGITTDNASKLQ--KFSGIAVISAITQAKDKALAVEKLLKNA
2TPS Chain:A ((16-219))
----ELLSVYFIMGSNNT-------KADPVTVVQKALKGGATLYQFREKGGDA-LTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAI-GDMILGVSAHTMSEVKQAEE-DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEI
General information:
TITO was launched using:
RESULT:
Template:
2TPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150114 for 1700 contacts (-88.3/contact) +
2D Compatibility (PS) -22464 + (NN) -19075 + (LL) 1136
1D Compatibility (HY) -10800 + (ID) 3850
Total energy: -205167.0 ( -120.69 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2TPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TPS-query.scw
PDB file :
Tito_Scwrl_2TPS.pdb
: