Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESIHHLRQKN
1OTF Chain:A ((2-60))
-PIAQLYIIE---GRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEPASK-----
General information:
TITO was launched using:
RESULT:
Template:
1OTF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19187 for 312 contacts (-61.5/contact) +
2D Compatibility (PS) -6982 + (NN) -6029 + (LL) 440
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -36758.0 ( -117.81 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1OTF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OTF-query.scw
PDB file :
Tito_Scwrl_1OTF.pdb
: