Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLFDYAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFCAFNLTPPYAVKIILLGQDPYHSTYLENEQELPVAMGLSFSVEKNAPIPPSLKNIFKEL-HANLGVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHKYIGWEAFSDQILIRLFETTTPLIVVLLGKVAQKKIALIPKNKHIIITAPHPSPLSRGFLGSGVFTSVQKAYREVYRKDFDFSL
1UDH Chain:A ((31-234))
-----------AWRPLMEPELANPLTAHLLAEYNRRCQT-EEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQ--------AHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIRPDPR-VHCVLKFSHPSPLSKVPFGTCQHFLVANRYLETRSISPIDWS
General information:
TITO was launched using:
RESULT:
Template:
1UDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127952 for 1558 contacts (-82.1/contact) +
2D Compatibility (PS) -21658 + (NN) -11839 + (LL) 1284
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -175565.0 ( -112.69 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1UDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDH-query.scw
PDB file :
Tito_Scwrl_1UDH.pdb
: