Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPNLENLDWKNLGFSYIKTDFRFIATYKNGSWSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEEL--FLKACAEVIKANQKWLAPYKSGASLYLRPFVIGVGD-NLGVKPASEYLFIVFCA--PVGAYFKGGIEKGGARFITTAFDRAAPKGT-GGVKVGGNYAASLLAHKIATEQGYDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPSVTRKSLMVLAKEHLKLKVEEREILIDELGAFKEAGACGTAAIITPIKEIAHNNKSYSFEAPGNITKQLYDLLLSIQQGEQEAPKDWIFEVG |
1A3G Chain:C ((9-306)) | -------------------------------WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFP-VSQSIDELMEACRDVIRKNNL--------TSAYIRPLIF-VGDVGMGVNPPAGYSTDVIIAAFPW----------QGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGY--ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKE-LGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1A3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -141167 for 2279 contacts (-61.9/contact) +
2D Compatibility (PS) -30329 + (NN) -16536 + (LL) 2476
1D Compatibility (HY) -17200 + (ID) 4900
Total energy: -207656.0 ( -91.12 by residue)
QMean score : 0.441
|
|
|