Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFGLNIDHIVTLREVRKTYEPEILEALFIAKNTHKVDLITIHLREDKRHIQNEDVLRLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGLDCS--LKGLEEVIRAYHNKGIEVSLFVDPLKDALHFAKEHQVKQVEFHTGVYANLHNALYSNANNQIHAISTLKDKCPKELKEELHNAFLQLRRMSKEAFFMGIVVCAGHGLNYSNVKELLKIPSLRELNIGHSVVSKAVLVGLEKAILEMAQLIKR
1M5W Chain:A ((4-240))
LLLGVNIDHIATLRNARGTAYPDPVQAAFIAE-QAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAV--ETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDA------------------------EQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE
General information:
TITO was launched using:
RESULT:
Template:
1M5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172769 for 2090 contacts (-82.7/contact) +
2D Compatibility (PS) -25938 + (NN) -17818 + (LL) 1432
1D Compatibility (HY) -13600 + (ID) 4600
Total energy: -233293.0 ( -111.62 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1M5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M5W-query.scw
PDB file :
Tito_Scwrl_1M5W.pdb
: