Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAV--PRFPLSELEAVLADEELYLAFSEWFSEAFLDVLK---KYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHL---NANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3KZP Chain:A ((5-235))
----KFQLFIQPKLDVLQGNIVEYEILLRDD-SAVPRFPLSELEAVLAD----EELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKN---AFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
General information:
TITO was launched using:
RESULT:
Template:
3KZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143828 for 1672 contacts (-86.0/contact) +
2D Compatibility (PS) -24003 + (NN) -14234 + (LL) 608
1D Compatibility (HY) -31200 + (ID) 9500
Total energy: -222157.0 ( -132.87 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_3KZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KZP-query.scw
PDB file :
Tito_Scwrl_3KZP.pdb
: