Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYKNGENRIYAVNDEGVEVGEVTFVPTG--------EDMFIIDHTGVDDAARGQGIAQELVKRAVEKAKSEGKKIVPLCPF---AKAEFSKKPEYQEVEASK
3JVN Chain:A ((56-136))
-------CMVYVAEMDDVIIGFITGHFCELISTVSKLVMMATIDELYIEKEYRREGVAEQLMMRIEQELKDYGVKEIFVEVWNKGA-----------------
General information:
TITO was launched using:
RESULT:
Template:
3JVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19193 for 432 contacts (-44.4/contact) +
2D Compatibility (PS) -7756 + (NN) -5096 + (LL) 1620
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -33625.0 ( -77.84 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3JVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVN-query.scw
PDB file :
Tito_Scwrl_3JVN.pdb
: