Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LSIQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYDVKFVSNFTDVDDKLIRAANELKLTVPEVADRFIGAYFDDVDQLNVA-KASVNPRVTENMDEIIQMISTLIEKGYAYESA----GDVYFQTKKFKDYGKLSGQELSELQ---H---GARVEYNERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLK-DNDPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDEWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLFAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQGTRFRRG |
3C8Z Chain:A ((19-413)) | PALRLFDSADRQVRPVTPG--PTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHD-YVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPD--RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-------------VLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPE-------------------APDATDVIARVRQYLADDLDTPKALAALDGWCTDALSYGGHDT------ESPRLVATTVDALLGVD----------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C8Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178409 for 3167 contacts (-56.3/contact) +
2D Compatibility (PS) -39272 + (NN) -7499 + (LL) 7204
1D Compatibility (HY) -18400 + (ID) 5850
Total energy: -242226.0 ( -76.48 by residue)
QMean score : 0.520
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