Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGLLEHKERLGYNIPKKDTEYIGFAALSEVGEMVGGVTAKIS--YGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTF---------------------------SYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
1N71 Chain:A ((45-175))
--------------------------------------RIAVAA-VDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYLGTDDLDHGTTLSQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVGVLPNANGWDKPDIWMAKTI
General information:
TITO was launched using:
RESULT:
Template:
1N71.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63330 for 679 contacts (-93.3/contact) +
2D Compatibility (PS) -10986 + (NN) -1801 + (LL) 3060
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -79857.0 ( -117.61 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1N71.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N71-query.scw
PDB file :
Tito_Scwrl_1N71.pdb
: