Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKD--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
3RVS Chain:A ((9-125))
-LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNK---
General information:
TITO was launched using:
RESULT:
Template:
3RVS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66161 for 895 contacts (-73.9/contact) +
2D Compatibility (PS) -12648 + (NN) -9860 + (LL) 560
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -100309.0 ( -112.08 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3RVS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RVS-query.scw
PDB file :
Tito_Scwrl_3RVS.pdb
: