Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LNLKDTVKLANGVEMPRLGFGVWKVQDGDEAVNSVKWAIEAGYISIDTAAAYKNEEGVGQAIKES-----GIKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELDYVDLYLIHWPVK--------------------GKFKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDAEIAPMVNQIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGK----------LLSNPEIKAIADAHGKSVAQVILRWDLQIGVVTIPKSVHQERIIQNADIFDFELTEEEVAKISGLNKDERTGPDPDNFNF |
3H4G Chain:A ((4-301)) | ----SCVLLHTGQKMPLIGLGTWKSEPG-QVKAAIKYALTVGYRHIDCAAIYGNELEIGEALQETVGPGKAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTWKALEALVAKGLVRALGLSNFSSRQIDDVLSVASVRPAVLQVECHPYLAQNELIAHCQARGLEVTAYSPLGSSDRAWRDPNEPVLLEEPVVQALAEKYNRSPAQILLRWQVQRKVICIPKSVTPSRILQNIQVFDFTFSPEEMKQLDALNKNLR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3H4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120723 for 2235 contacts (-54.0/contact) +
2D Compatibility (PS) -28405 + (NN) -11070 + (LL) -188
1D Compatibility (HY) -25600 + (ID) 5400
Total energy: -191386.0 ( -85.63 by residue)
QMean score : 0.555
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