Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDNKLEFTTIDEYITQAPPETKEVLQKIRETIKAAAPEATEKISYQMP-TFYLEGNLVHFAVAK-------NHYGFYPASSGIAAFESKLGNY---------------KHSKGAVQFP-----IKEEVPYEL----IKEMTLFRLAENKQKAAEKLAKKKKK
1V8C Chain:A ((1-165))
PKVNLYATFRDLTGKSQLELPGATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPVAG-GGFERTFGAFPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLKVGSLSIPQLRVEVEGEEAERWFERIAFAASR
General information:
TITO was launched using:
RESULT:
Template:
1V8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14040 for 836 contacts (16.8/contact) +
2D Compatibility (PS) -13560 + (NN) -2723 + (LL) 204
1D Compatibility (HY) -7200 + (ID) 1200
Total energy: -10439.0 ( -12.49 by residue)
QMean score : 0.202
(partial model without unconserved sides chains):
PDB file :
Tito_1V8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8C-query.scw
PDB file :
Tito_Scwrl_1V8C.pdb
: