Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MSILVTGANGQLGTELVQLLKEHNLTVTEW-------DKDSVDIVDKAAVKKAMLDLKPEWIIHCAA--FTNVEAAEDELKNVNWEVNVDGTENISEAAEIVGAKLVYISTDYVFDGTKKEAYLPDDKTNPLNQYGIAKLAGEKVALEKNSQTYVIRTSWVFG---KYGNNFVYSMLKLAE-THKELKVVNDQLGRPTYTYDLADFIRFVIEKNPAY----GIYQFSNSGTATWFEFATEILKDKDVT---VNPCTSDEFPQKAERPKTSIMSLEKVEKLGFNIPT-----WQDALVRFKK---------- |
| 4NDN Chain:F ((15-323)) | IPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVDAAS--------QLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPP-YREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPIT-DSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122578 for 2203 contacts (-55.6/contact) +
2D Compatibility (PS) -28835 + (NN) -7563 + (LL) 572
1D Compatibility (HY) -15200 + (ID) 4550
Total energy: -178154.0 ( -80.87 by residue)
QMean score : 0.519
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