Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQIDKQKIADAVKVILEAVGENPDREGLIDTPMRVARMYEEVFAGLKKD-PSVHFDTIFEEQHEELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAGLSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPGTKTITSAVRGAFKNDDKLRSEVLALIKHN
1WUQ Chain:D ((33-216))
---VDLERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIP-DGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLR--
General information:
TITO was launched using:
RESULT:
Template:
1WUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102799 for 1377 contacts (-74.7/contact) +
2D Compatibility (PS) -20010 + (NN) -7281 + (LL) 516
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -150224.0 ( -109.10 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1WUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WUQ-query.scw
PDB file :
Tito_Scwrl_1WUQ.pdb
: