Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTET-KKTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDADYEKAMKDKVGTGPQE---YLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAAQKADTTTISINNLAKMEDGTYKLEEQNYAHGYRVVFSMDVKDGKITKSDYNYVDKDGKLKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTIKVYNLVEAE |
3KYS Chain:A ((3-218)) | -----------SIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHLESVD--------------------------------IRQIYDKFPEKKG-----------GLKELFGKGPQNAFFLVKFWADLNCNIQDAGAFYGVTSQYESSENM------------------------------TVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPE------KYMMNSVLENFTILLVVTN-----RDTQETLLCMACVFEVSNSEHGAQHHIYRLVK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KYS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 66742 for 1488 contacts (44.9/contact) +
2D Compatibility (PS) -20564 + (NN) 410 + (LL) 5616
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: 40504.0 ( 27.22 by residue)
QMean score : 0.158
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