Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGK------NPL-LVGVLKGSVPFMAELLKHI---DTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
1P17 Chain:A ((9-192))
------EKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLRGSFMFTADLCRALCDFNVPVRMEFICVSSYG---TSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPEVYAE
General information:
TITO was launched using:
RESULT:
Template:
1P17.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119153 for 1286 contacts (-92.7/contact) +
2D Compatibility (PS) -18871 + (NN) -6800 + (LL) 244
1D Compatibility (HY) -20800 + (ID) 3950
Total energy: -169330.0 ( -131.67 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1P17.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P17-query.scw
PDB file :
Tito_Scwrl_1P17.pdb
: