Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR
3A1P Chain:D ((9-92))
--------VFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATKK
General information:
TITO was launched using:
RESULT:
Template:
3A1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42228 for 525 contacts (-80.4/contact) +
2D Compatibility (PS) -9444 + (NN) -7026 + (LL) 240
1D Compatibility (HY) -9200 + (ID) 2600
Total energy: -70258.0 ( -133.82 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3A1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A1P-query.scw
PDB file :
Tito_Scwrl_3A1P.pdb
: