Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4IKE Chain:B ((1-198))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG----NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVK--VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDGN
General information:
TITO was launched using:
RESULT:
Template:
4IKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69474 for 1472 contacts (-47.2/contact) +
2D Compatibility (PS) -21387 + (NN) -9892 + (LL) 544
1D Compatibility (HY) -17600 + (ID) 4450
Total energy: -122259.0 ( -83.06 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_4IKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IKE-query.scw
PDB file :
Tito_Scwrl_4IKE.pdb
: