Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIAAMEEELKLLVENLEDKSQETVLSNVYYSGRYGEHELVLVQSGVGKVMSAMSVAILVESFKVDAIINTGSAGAVATGLNVGDVVVADTLVYHDVDLTAFGYDYGQMSMQPLYFHSDKTFV-STFEAVLSKEEMTSKVGLIATGDSFIAGQEKIDVIKGHFPQVLAVEMEGAAIAQAAQATGKPFVVVRAMSDTAAHDANITFDEFIIEAGKRSAQVLMAFLKAL
3EEI Chain:B ((6-233))
--VAVIGAMEQEIELLREMMENVKAVSFGRFSAYEGELAGKRMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHDVDVTAFGYAWGQVPQLPARFASDGILIEAAKRAARTFEGAAVEQGLIVSGDRFVHSSEGVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTAAANSAKMVAEIVKSL
General information:
TITO was launched using:
RESULT:
Template:
3EEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170712 for 2064 contacts (-82.7/contact) +
2D Compatibility (PS) -24117 + (NN) -6140 + (LL) 272
1D Compatibility (HY) -16000 + (ID) 4700
Total energy: -221397.0 ( -107.27 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3EEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEI-query.scw
PDB file :
Tito_Scwrl_3EEI.pdb
: