Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK---------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KO7 Chain:D ((1-157))
MRVVIQRVKGAILSVRK--------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD-
General information:
TITO was launched using:
RESULT:
Template:
3KO7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85147 for 954 contacts (-89.3/contact) +
2D Compatibility (PS) -14980 + (NN) -7275 + (LL) 544
1D Compatibility (HY) -14400 + (ID) 2750
Total energy: -124008.0 ( -129.99 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3KO7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KO7-query.scw
PDB file :
Tito_Scwrl_3KO7.pdb
: